PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3101s0030.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 302aa    MW: 33562.7 Da    PI: 8.8707
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3101s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.32.3e-34602001128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 
                             lp+G++F+Ptd+el+ e+L+ kv++++      ++  e+i+++d    i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+
  SapurV1A.3101s0030.1.p  60 LPAGVKFDPTDQELL-EHLEGKVKADSrkvhplID--EFIPTIDgengICYTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRK 142
                             799************.99******99956643322..23444444445**********.555555677******************7 PP

                     NAM  78 ....tk..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                 t+  + +W++tgk+++vl+ +g+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  SapurV1A.3101s0030.1.p 143 vhtdTEggETRWHKTGKTRPVLA-GGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 200
                             45553344667************.9*************6657999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-3955219IPR003441NAC domain
PROSITE profilePS5100534.30660219IPR003441NAC domain
PfamPF023654.9E-1661200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MTWCNDCNDV QTIETSSPPP ACNAGVLAQR HKECLSRSCP SCGHQIKSQD QAGIHDLPGL  60
PAGVKFDPTD QELLEHLEGK VKADSRKVHP LIDEFIPTID GENGICYTHP EKLPGVSKDG  120
LIRHFFHRPS KAYTTGTRKR RKVHTDTEGG ETRWHKTGKT RPVLAGGKVK GYKKILVLYT  180
NYGKQRKPEK TNWVMHQYHL GNNEEEKDGE LVVSKVFYQT QPRQCGSLVK DSVSVPSKFK  240
VQSSGHDQGS NLKNSTTLVD YYHPSSFISF DQSGQNRSAN PNPPQQLPPH FAVHDGSSFI  300
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-126020015140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707930.0AB970793.1 Populus nigra PniNAC122 mRNA for NAC transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372761.10.0no apical meristem family protein
SwissprotO494591e-134NAC73_ARATH; NAC domain-containing protein 73
TrEMBLB9MYC70.0B9MYC7_POPTR; No apical meristem family protein
STRINGPOPTR_0017s04800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-135NAC domain containing protein 73